rs27252667 SNP Detail

Summary

• ID
  rs27252667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133392402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCGTTTAC ACTCATTTCC
  ACCACAAGAG GGCAGCCATC TCTAAAAAAA CAACAGTCGA GTGCTCTTCA GAGAAATTGG
  GCCAAACTTG AGGAAAGTTC CTGGGAAAGG CTTTTTAGCA GCACCTCTCT GGGCTACAAA
  AAAGAAGCCA GCAGGCACCA CCAAGGTGGA GTAACTGTCC AGAGGCATCC ATTTTACCTC
  R
  GAGACTTGAT TACTAAGGAT ATCCTAAACG GCCAAACTCT CTCTTCTGGT GTTCCAGAGG
  CCCAAAGCTG CAAGGCATTG TTGATGTCAT CACCAAAGGT TTCATTTTCA TCTTTTCTTG
  GGGTTGGTCC AACAGCTGTC AGCTTTCTCT TCCTCATTAA AGGCAACTTT CTCATTTAAA
  TCTCATATAG GTTCGGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37460896	NES08983607	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G		A	A	G	G
ss147626657	ENSMUSSNP3167973	ENSEMBL	ENSEMBL_Sanger	f	SNP		A										G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27252667					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460896	NES08983607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133392402 () rs orientation: forward

Symbol	Name	Function Class
Bmp2	bone morphogenetic protein 2	1677 bp upstream
Cpgi12316	CpG island 12316	1372 bp proximal
Rr366783	regulatory region 366783	within coordinates
Rr565619	regulatory region 565619	within coordinates
Rr565620	regulatory region 565620	162 bp distal
Rr565621	regulatory region 565621	1391 bp proximal
Rr565622	regulatory region 565622	1688 bp proximal
Rr565623	regulatory region 565623	1693 bp proximal
Tssr20347	transcription start site region 20347	1736 bp upstream
Tssr20348	transcription start site region 20348	1793 bp upstream