rs27252668 SNP Detail

Summary

• ID
  rs27252668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133392106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTGAAC TGGCAGATAC
  TGAGAAAAAC TTTGTTAATG GTAAGATCGA GCAAGTCCGC AAGCACTGTA CATTTTCAGA
  GAAGACAGAT AGTACCCCCT CAAAGTATTA AGTAACCACA CATTATTTGT TGTGGGTGGG
  AGGAGGCCAC CAGCATAGAG TGTAAAAAGC AATAAGTCTC TGTATTTGTT TCTTCTCTAC
  R
  ATTTCAATTG CATGAAAAAT GGACTGAACA TGACCATCTA CACTGTATTC CAAAGAACAG
  AGAATTCATT TAAACTGGAT TCACTTCTAG GTCCCATGCG TTTACACTCA TTTCCACCAC
  AAGAGGGCAG CCATCTCTAA AAAAACAACA GTCGAGTGCT CTTCAGAGAA ATTGGGCCAA
  ACTTGAGGAA AGTTCCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37460897	NES08983606	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27252668					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460897	NES08983606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133392106 () rs orientation: forward

Symbol	Name	Function Class
Bmp2	bone morphogenetic protein 2	1973 bp upstream
Cpgi12316	CpG island 12316	1668 bp proximal
Rr366783	regulatory region 366783	62 bp upstream
Rr565619	regulatory region 565619	12 bp proximal
Rr565620	regulatory region 565620	113 bp proximal
Rr565621	regulatory region 565621	1687 bp proximal
Rr565622	regulatory region 565622	1984 bp proximal
Rr565623	regulatory region 565623	1989 bp proximal