rs27252669 SNP Detail

Summary

• ID
  rs27252669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133391972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTACAAA GATCAGACTT
  GTAATTCTCA CCTTAGCTTG CCCCAGGACT GCCTGGCCAC TGGAAACCCC TTACATATTT
  GTTAACAGAG ACGCTAAATA GGATAAATTC AGAGCTACTC CAGAGCTACT CTCGCCTTCT
  GAACTGGCAG ATACTGAGAA AAACTTTGTT AATGGTAAGA TCGAGCAAGT CCGCAAGCAC
  Y
  GTACATTTTC AGAGAAGACA GATAGTACCC CCTCAAAGTA TTAAGTAACC ACACATTATT
  TGTTGTGGGT GGGAGGAGGC CACCAGCATA GAGTGTAAAA AGCAATAAGT CTCTGTATTT
  GTTTCTTCTC TACAATTTCA ATTGCATGAA AAATGGACTG AACATGACCA TCTACACTGT
  ATTCCAAAGA ACAGAGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37460898	NES08983605	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	C		T	T	C	T
ss147626642	ENSMUSSNP2038339	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27252669					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460898	NES08983605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133391972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12316	CpG island 12316	1802 bp proximal
Rr366783	regulatory region 366783	196 bp upstream
Rr565619	regulatory region 565619	146 bp proximal
Rr565620	regulatory region 565620	247 bp proximal
Rr565621	regulatory region 565621	1821 bp proximal