rs27252670 SNP Detail

Summary

• ID
  rs27252670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133391904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCAGCAG CCTCCTTTAT
  GTAGAGTCCT AACCAGTAGA CTGTGTTCTG ATACATTGTG TCTGGACCTT CTTACAAAGA
  TCAGACTTGT AATTCTCACC TTAGCTTGCC CCAGGACTGC CTGGCCACTG GAAACCCCTT
  ACATATTTGT TAACAGAGAC GCTAAATAGG ATAAATTCAG AGCTACTCCA GAGCTACTCT
  Y
  GCCTTCTGAA CTGGCAGATA CTGAGAAAAA CTTTGTTAAT GGTAAGATCG AGCAAGTCCG
  CAAGCACTGT ACATTTTCAG AGAAGACAGA TAGTACCCCC TCAAAGTATT AAGTAACCAC
  ACATTATTTG TTGTGGGTGG GAGGAGGCCA CCAGCATAGA GTGTAAAAAG CAATAAGTCT
  CTGTATTTGT TTCTTCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37460899	NES08983604	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27252670					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460899	NES08983604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133391904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12316	CpG island 12316	1870 bp proximal
Rr366783	regulatory region 366783	264 bp upstream
Rr565619	regulatory region 565619	214 bp proximal
Rr565620	regulatory region 565620	315 bp proximal
Rr565621	regulatory region 565621	1889 bp proximal