rs27252672 SNP Detail

Summary

• ID
  rs27252672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133391759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATTATC TGGGCTGAAC
  TGCTCAAGGA AAAGTTGCCA AAGTATGACT CTTTAAGTAC TTAATTTCAT CCCAGGTCAT
  GTCCACACAC AAATGAGGAT TTCCGATATC TCCTGAAAAC CTGGCAAAAA ACGGACTAGA
  ATAGAATAGC AGCAGCCTCC TTTATGTAGA GTCCTAACCA GTAGACTGTG TTCTGATACA
  Y
  TGTGTCTGGA CCTTCTTACA AAGATCAGAC TTGTAATTCT CACCTTAGCT TGCCCCAGGA
  CTGCCTGGCC ACTGGAAACC CCTTACATAT TTGTTAACAG AGACGCTAAA TAGGATAAAT
  TCAGAGCTAC TCCAGAGCTA CTCTCGCCTT CTGAACTGGC AGATACTGAG AAAAACTTTG
  TTAATGGTAA GATCGAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37460901	NES08983602	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27252672					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460901	NES08983602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133391759 () rs orientation: forward

Symbol	Name	Function Class
Rr366783	regulatory region 366783	409 bp upstream
Rr565619	regulatory region 565619	359 bp proximal
Rr565620	regulatory region 565620	460 bp proximal