rs27252673 SNP Detail

Summary

• ID
  rs27252673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133391678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTCAT GTGAATTTGC
  ATAATGGTCC ACCTAGTAGG AACAATGCTG AATGCTAATA GCTGCAGGAT GCAATAAAAT
  TAAACATTAT CTGGGCTGAA CTGCTCAAGG AAAAGTTGCC AAAGTATGAC TCTTTAAGTA
  CTTAATTTCA TCCCAGGTCA TGTCCACACA CAAATGAGGA TTTCCGATAT CTCCTGAAAA
  Y
  CTGGCAAAAA ACGGACTAGA ATAGAATAGC AGCAGCCTCC TTTATGTAGA GTCCTAACCA
  GTAGACTGTG TTCTGATACA TTGTGTCTGG ACCTTCTTAC AAAGATCAGA CTTGTAATTC
  TCACCTTAGC TTGCCCCAGG ACTGCCTGGC CACTGGAAAC CCCTTACATA TTTGTTAACA
  GAGACGCTAA ATAGGATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37460902	NES08983601	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27252673					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460902	NES08983601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133391678 () rs orientation: forward

Symbol	Name	Function Class
Rr366783	regulatory region 366783	490 bp upstream
Rr565619	regulatory region 565619	440 bp proximal
Rr565620	regulatory region 565620	541 bp proximal