rs27252674 SNP Detail

Summary

• ID
  rs27252674
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133391430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGGCTA ATCCAACACT
  GACTAGGTGA GCCCTAGGTA GAGCAAATGC TACTCTCGGC TGTAGCTTCT GGTCCCTAGG
  AAAGAATCAG GAGTGAGGAG AGCCAGGGTT GGGTGTCGCA TCAGCAGCAA ATGATGCACA
  GGCTAAGAGG TTTCTCAGGG GAGTTGCCAC AGGTTACAAT GGAATGACAA TTACAAGGTA
  S
  ATGGATCATG TCACGCCTGC TGTGACCTTT ACAATACATG GGGATCATTA TTTTCATGTG
  AATTTGCATA ATGGTCCACC TAGTAGGAAC AATGCTGAAT GCTAATAGCT GCAGGATGCA
  ATAAAATTAA ACATTATCTG GGCTGAACTG CTCAAGGAAA AGTTGCCAAA GTATGACTCT
  TTAAGTACTT AATTTCATCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37460903	NES08983600	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G		G	G	G	G		C
ss320511619	CHEV_2_133375246	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27252674					SNP	G	G	G	G	C	G	G	G	G	C	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460903	NES08983600	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133391430 () rs orientation: forward

Symbol	Name	Function Class
Rr366783	regulatory region 366783	738 bp upstream
Rr565619	regulatory region 565619	688 bp proximal
Rr565620	regulatory region 565620	789 bp proximal