rs27252680 SNP Detail

Summary

• ID
  rs27252680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133391116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTAGAT GGGAGGGGTT
  TTTCAATACA GAGGCTTTGG GTGAAAACTC TGACTCCATA GCTACCTTGT AAAAACATTA
  ATACTGAGGT TGACTCCTTT TTAAAAAACA TTACTTCTTT TATCTTAAGA GATTGTAACT
  ACCCCCTTTC CCTCTTCCAA CCTAATACAA TAGCAAAACA TTTTAATATC ATTGGTCACA
  Y
  ATGCAAGTAT ATTGCTATAT GGTAATTAAA CAAGATTTGA TGGCTGTCTA AAACAATGTG
  ACTTGGCCAA CCTGGCCTAG TTTGGCCTAC AAATCACTCC ACCCATCATT CTTACTGTGG
  CTAATCCAAC ACTGACTAGG TGAGCCCTAG GTAGAGCAAA TGCTACTCTC GGCTGTAGCT
  TCTGGTCCCT AGGAAAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37460909	NES08983586	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27252680					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460909	NES08983586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133391116 () rs orientation: forward

Symbol	Name	Function Class
Rr366783	regulatory region 366783	1052 bp upstream
Rr565619	regulatory region 565619	1002 bp proximal
Rr565620	regulatory region 565620	1103 bp proximal