rs27252689 SNP Detail

Summary

• ID
  rs27252689
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133390299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGAATA ACACCACCAG
  ATAGGGAGCC CTCAGGGGAG AGTTCACATC CAATCTGCAA CCCTGTCCTT GCTATAAGCT
  TACTAATTTC ACATTGCTTC CCATTAGTCC CTCAGCAACT CTTTGCTCTC CTGAAGTGTC
  CTTGTCATAT GTCTTATGCT TTATATTTCT TTACCTCTGA ACATATCATA CTTCTTCCAC
  W
  GGCTCCTAAA TAAAGGATGT GCAGAGCTTA TGTGTCTTTA TGCACCGGAT CCAAGTAACA
  TAGTGTTGTG AAGTTCATAG ATCCTCAGTA AAGATTTATA GACTGGGTAG TATTAGTCAG
  TTTGCTTTTA TTGTTGTTGT TGTTTGCTTT TGCTTTTAGT TCTGAAACAA TGAAACAAAT
  ACCTAAAACA GTTTGAGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37460918	NES08983575	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27252689					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37460918	NES08983575	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133390299 () rs orientation: forward

Symbol	Name	Function Class
Rr366783	regulatory region 366783	1869 bp upstream
Rr565619	regulatory region 565619	1819 bp proximal
Rr565620	regulatory region 565620	1920 bp proximal