rs27254639 SNP Detail

Summary

• ID
  rs27254639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:136564099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTGATTT GACTATTTCC
  CAAAAATTAG CTGGGCGGTG GTGGCGCACG CCTTTAATCC CAGCATTCGG GAGGCAGAGG
  CAGGCGGATT TCTGAGTTCA AGGCCAGCCT GGTCTACAAA GTGAGTTCCA GGACAGCGAG
  GGCTATACAG AGAAACCCTG TCTCGAAAAA CCAAAAAAAA AAAAAAAATC TTGCTACCTT
  Y
  TAGGCCAAAA AAAGACTACG CTGCAATCTG AAATGCTTGG AACAATAAAA AGCCAAGGTG
  ACCAGGAGAG AAAATGCAGT ATTTTTGTAC TTTCCTCCCC TGAAAGTGCC CCATTATGGG
  CCATCAGTCA GAGATTGAGA ATGAAGTAGG ATATAGGTTA GTTTTCCAAC CCCTACTTTT
  AGACTTTACT TGCGTTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37449762	NES08966589	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27254639					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37449762	NES08966589	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136564099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr565864	regulatory region 565864			1634 bp distal
Rr565865	regulatory region 565865			1732 bp distal
Snap25	synaptosomal-associated protein 25			Intron
				Noncoding-Transcript-Variant
Tssr20409	transcription start site region 20409			1595 bp upstream