rs27254845 SNP Detail

Summary

• ID
  rs27254845
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136510910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAATATA AAATAAAGAT
  ATTATGGAGA AAATACAGGT GCTTGTGAGA TAGCATAAGG AAGAGGAATA AAATTAGGAA
  AAGGTTCTCC ATCCTTAGAT GTGTCTGTAT ATTTCATGCC TCTGCTTCAG GAACTGCCCT
  TCTGTGAGAT GTTCTATGCT GAGCAGTTCC TCCCACATCC CTATGGACAA ACAGGCAATT
  M
  TTTGGTCATC TTTGATATCT TGATGATATA ATTGCCAAAA CAGCTTGAAA TTTAAAATAT
  CAGAACTAAT CCATCTGCTT TAAGTTATAG TAATGCTATT ATAGTAAGGG TAGAAACAGC
  TCCAAACTAA GGGAGAATAA ATTTTAGTTG TGAAACTGAA GAATTAAGAT GAGACACTAA
  GTAACAAGAA AATCAGATGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37449972	NES08968097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27254845					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37449972	NES08968097	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136510910 () rs orientation: forward

Symbol	Name	Function Class
Gm32659	predicted gene, 32659	within coordinates
Rr565852	regulatory region 565852	207 bp proximal
Rr565853	regulatory region 565853	700 bp proximal
Rr565854	regulatory region 565854	1285 bp proximal