rs27254847 SNP Detail

Summary

• ID
  rs27254847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136510787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAATTCA TCATTAGTTG
  CCTTAGGGAA AATTTTTTAG AGGCAGGAAA GGTACGATAT TTTATTTATA ATATAGGAAA
  TGTTTGGACT ACACAATACT AAATAATAAG ATAAAGATAA AAATACTAAT ATAAAATAAA
  GATATTATGG AGAAAATACA GGTGCTTGTG AGATAGCATA AGGAAGAGGA ATAAAATTAG
  R
  AAAAGGTTCT CCATCCTTAG ATGTGTCTGT ATATTTCATG CCTCTGCTTC AGGAACTGCC
  CTTCTGTGAG ATGTTCTATG CTGAGCAGTT CCTCCCACAT CCCTATGGAC AAACAGGCAA
  TTCTTTGGTC ATCTTTGATA TCTTGATGAT ATAATTGCCA AAACAGCTTG AAATTTAAAA
  TATCAGAACT AATCCATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss37449974	NES08968092	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs27254847					SNP	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37449974	NES08968092	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136510787 () rs orientation: forward

Symbol	Name	Function Class
Gm32659	predicted gene, 32659	within coordinates
Rr565852	regulatory region 565852	330 bp proximal
Rr565853	regulatory region 565853	823 bp proximal
Rr565854	regulatory region 565854	1408 bp proximal