rs27254848 SNP Detail

Summary

• ID
  rs27254848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136510762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGGTTTT CTGAAGGTGA
  TGTCTTAACA ATTCATCATT AGTTGCCTTA GGGAAAATTT TTTAGAGGCA GGAAAGGTAC
  GATATTTTAT TTATAATATA GGAAATGTTT GGACTACACA ATACTAAATA ATAAGATAAA
  GATAAAAATA CTAATATAAA ATAAAGATAT TATGGAGAAA ATACAGGTGC TTGTGAGATA
  R
  CATAAGGAAG AGGAATAAAA TTAGGAAAAG GTTCTCCATC CTTAGATGTG TCTGTATATT
  TCATGCCTCT GCTTCAGGAA CTGCCCTTCT GTGAGATGTT CTATGCTGAG CAGTTCCTCC
  CACATCCCTA TGGACAAACA GGCAATTCTT TGGTCATCTT TGATATCTTG ATGATATAAT
  TGCCAAAACA GCTTGAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37449975	NES08968090	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G		A		A
ss320519223	CHEV_2_136494578	CHEVERUD	SCREENING_POP	f	SNP								A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27254848					SNP	G	G	G	G	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37449975	NES08968090	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136510762 () rs orientation: forward

Symbol	Name	Function Class
Gm32659	predicted gene, 32659	within coordinates
Rr565852	regulatory region 565852	355 bp proximal
Rr565853	regulatory region 565853	848 bp proximal
Rr565854	regulatory region 565854	1433 bp proximal