rs27254851 SNP Detail

Summary

• ID
  rs27254851
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136509245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTAGTGA TAAGCTAGAA
  TAGAAGACTA TAGAGTGAAT GGGAACTTGG AGAGTAAGTA GGGCTCTTAT AGAACCTATA
  AAAATCCCCA CAATGGTCCT TGGAGGAAAT TGAAATCCAA GGGTTGTTAT TTAATAGCTA
  AATTTCCCCT TAGCCAAATG TGTCTGCAGA CATGTATTAT GTAACATAGG AAGTATATGG
  K
  TTTTTTTGGT TTACAATGTG GAGCAACTTA ACATTCTCCA AATAAACTTT TCTTTACAGT
  ATTTCTTTTG CCAGTCATTA CCTTAGCCCT CATGAATAGA AAGATGACTT TGGTATGTCA
  GCTTTCAAGG AGTTTGCGGA CTTACATATC TCTCTGTCAT TTAGATTCAG TCCAGGTCCT
  TGCTTCTACT GAAACCTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37449978	NES08968167	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27254851					SNP	G	G	G	G	G	G	T	G	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37449978	NES08968167	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136509245 () rs orientation: forward

Symbol	Name	Function Class
Gm32659	predicted gene, 32659	within coordinates
Rr565852	regulatory region 565852	1872 bp proximal