rs27256507 SNP Detail

Summary

• ID
  rs27256507
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129789994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGGGAAC TGCCTGCCTG GCTCCCTAGA GTGGCCACAA
  TGCCTGCCAC AGCCGGGAAG GGGCCGACTA CAGCCGTGCC CCTCATTTGG CTCCTCTCAG
  K
  CTGCACATGG GTGCTTGCCC ACACGTCCCT TGTGCTTGCC TGGCTGCTCG CTCCCTGCCT
  CCAAGGGCTT GAGCCAGGCA GGCGGGCAGT GCAGCAAGCA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37473835	NES08991257	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27256507					SNP	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37473835	NES08991257	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129789994 () rs orientation: forward

Symbol	Name	Function Class
Gm28196	predicted gene 28196	494 bp upstream
Rr564998	regulatory region 564998	within coordinates