rs27256508 SNP Detail

Summary

• ID
  rs27256508
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129789833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTC TGTGCCCCAG AGTGAGTTGC
  S
  AGATGCTAAT GGCGAGTGCG GGCGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37473836	NES08991256	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C	G		G	C	C		G	C		G
ss45304374	mCV23299295	ABI	CRAMUS_MOUSE	f	SNP	C	C	G				G	G
ss147592588	ENSMUSSNP6281299	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G					G
ss320506193	CHEV_2_129773649	CHEVERUD	SCREENING_POP	f	SNP											G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27256508					SNP	C	C	G	C	C	G	G	G	C	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37473836	NES08991256	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129789833 () rs orientation: forward

Symbol	Name	Function Class
Gm28196	predicted gene 28196	655 bp upstream
Rr564998	regulatory region 564998	within coordinates