rs27256510 SNP Detail

Summary

• ID
  rs27256510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129789721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGAGA GAGAGCTCAA
  AATGGGACAG ACTGTGTGTG TGTCAACCCT CTGACTGTAG ACTTGGACTA ACGTTGGGAC
  AGAATTTGTC AGTGATACTT ATAAAAAAAA CAACTCAGCG CTGTTTTCCT GCTCCCCTGC
  ATGAGCCCCG GGCTGCTCAG AAGAGTTCTG GGATGCAGCT GCAGAGCTGG ACTAAGAGCC
  R
  GACAACTTTG GGCCGGAGCA GTTAGGGCCT TAGCAGCAGC AGTGGTGCTG AGGTTCTGGG
  TTCTGCAGGC ACAGTGGCGA CAGAGGCCGT CTGTGCCCCA GAGTGAGTTG CGAGATGCTA
  ATGGCGAGTG CGGGCGGCCT CTGAGACAGG ACCGGCGGCA GAGGCCGCAG CCCAGAGGGA
  ACTGCCTGCC TGGCTCCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37473838	NES08991254	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27256510					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37473838	NES08991254	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129789721 () rs orientation: forward

Symbol	Name	Function Class
Gm28196	predicted gene 28196	767 bp upstream
Rr564998	regulatory region 564998	77 bp proximal