rs27257057 SNP Detail

Summary

• ID
  rs27257057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136328064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCTGTTG ATGTGTGTAA
  TACACAGAAA GGGGCGGGGG TGGGAGGGTA GAGAAAGGAG GAAGAAAAAA AGCAAGGGCC
  TGTGGGAAAA ACAAACACTG ACAGAACACC CCTGGAAAAT GGCCCTAACT TCTACAGTCT
  CCCAAGGCTT ACAGAGTCGT TTCTTATTCT CTCCTGTCTG AGCTGCATCA CATTTCACTG
  Y
  CTCACTGGAC TCAATGAAGA GTTCAGTGTT TGTGTTGTAA CACAAAGCTG TAGCCAGTGG
  GCTGTTTTCA TATACAGGCT GCAAGTTTCA ACAGAGCACT GGCATTTCTC ATTTAATGTG
  AACAGACACT TTCCCCACAG GTCAAAAGGT CTTGGAGTAT GGAAAGTAGC ATAAATCTCC
  TTAGAATGTA TTTAAGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37450784	NES08973257	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27257057					SNP	T	T	T	T	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37450784	NES08973257	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136328064 () rs orientation: forward

Symbol	Name	Function Class
Gm32546	predicted gene, 32546	within coordinates
Rr565839	regulatory region 565839	239 bp distal
Rr565840	regulatory region 565840	within coordinates
Rr565841	regulatory region 565841	192 bp distal