rs27257058 SNP Detail

Summary

• ID
  rs27257058
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136328002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTCCAT AAAAGCTGTA
  AAATCAGGAA AGAAAAAAAA TCAATAGAAC AGGCCAGTAG GTGGCGCTGT TGATGTGTGT
  AATACACAGA AAGGGGCGGG GGTGGGAGGG TAGAGAAAGG AGGAAGAAAA AAAGCAAGGG
  CCTGTGGGAA AAACAAACAC TGACAGAACA CCCCTGGAAA ATGGCCCTAA CTTCTACAGT
  S
  TCCCAAGGCT TACAGAGTCG TTTCTTATTC TCTCCTGTCT GAGCTGCATC ACATTTCACT
  GTCTCACTGG ACTCAATGAA GAGTTCAGTG TTTGTGTTGT AACACAAAGC TGTAGCCAGT
  GGGCTGTTTT CATATACAGG CTGCAAGTTT CAACAGAGCA CTGGCATTTC TCATTTAATG
  TGAACAGACA CTTTCCCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37450785	NES08973256	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27257058					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37450785	NES08973256	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136328002 () rs orientation: forward

Symbol	Name	Function Class
Gm32546	predicted gene, 32546	within coordinates
Rr565839	regulatory region 565839	177 bp distal
Rr565840	regulatory region 565840	within coordinates
Rr565841	regulatory region 565841	130 bp distal