rs27257060 SNP Detail

Summary

• ID
  rs27257060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136327749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAACTAG GTTGCCTAAC
  TGGCTAATGT TATTGGGTTG CTAATTTTAT ATGTTTTCTA AGACAACACA TTCATTTACA
  CTATACCTTA AAAGGAAAAC TAATAACATT GTTATTTACA TAAATTATCA TACCAAAGAA
  AAGGTGGTGT AGGAACATTT GTTTGCTCTG AAATGCCGTT TTCATAATGA AGAGCTATTA
  Y
  GTTACCGCAA AGGTTCTCAG CAGAACAAGC ACAGAGCCAT GGAAAGTGAA ACCAGCTTCC
  ATAAAAGCTG TAAAATCAGG AAAGAAAAAA AATCAATAGA ACAGGCCAGT AGGTGGCGCT
  GTTGATGTGT GTAATACACA GAAAGGGGCG GGGGTGGGAG GGTAGAGAAA GGAGGAAGAA
  AAAAAGCAAG GGCCTGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37450787	NES08973254	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27257060					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37450787	NES08973254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136327749 () rs orientation: forward

Symbol	Name	Function Class
Gm32546	predicted gene, 32546	within coordinates
Rr565839	regulatory region 565839	within coordinates
Rr565840	regulatory region 565840	77 bp proximal
Rr565841	regulatory region 565841	102 bp proximal