rs27257062 SNP Detail

Summary

• ID
  rs27257062
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:136327023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAATTAAT ATGTTTTTCT
  TTCTTTTTTC TTTTTTTCTT GGATCTCATT CTGCAGTTAG TATGACTCTT AGATAAATAG
  CAGTTGCTTC CAGTTCCCTC CCTACACACA GAAGGACAAG TTCACAGTCA AAAAAGGGAC
  ACACTTCATG CTCCACTGCT CCCAAGCAGA ATCAGCTAAG GTTTTGCCAT CTTGCTTCGG
  S
  CCCTTTCTGG ATCCCTTCCT CACTATACCA CACATGGATC CTGGTCCCCA GCCCTGCATC
  AAGCCAAACC CTTACATGCT ACTGTGTGAT AGTCCAAGTC AAGTGCTCTT CCCTTCCCCT
  GTCTTTCAAA TATTTACCAA TCTCTTATTT GCAAGCCACT GATTCTAAGT AGCCAAACAC
  GAGGAGGCCG TGCTGGGGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37450789	NES08973252	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27257062					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37450789	NES08973252	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:136327023 () rs orientation: forward

Symbol	Name	Function Class
Gm32546	predicted gene, 32546	within coordinates
Rr565839	regulatory region 565839	511 bp proximal
Rr565840	regulatory region 565840	803 bp proximal
Rr565841	regulatory region 565841	828 bp proximal