rs27257477 SNP Detail

Summary

• ID
  rs27257477
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129473938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACACGGGTG TATAGATGAG TTAAAAGAAT GTCCTCGCTG
  GCATCCTAAT TTTGTCTTAA GTTTTTTTGG AGGGAGAAAG GAACAAGGCA AGGGAAGATG
  W
  GTAGCTTTGG CTTTAACCAG GCAGCCTGGG GGCTCCCAAG CCTATGGAAC CCTGGTACAA
  AGAAGAGAAC AGAAGCGCCC TGTGAGGAGT GGGATTTGTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37474901	NES08995960	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27257477					SNP	T	T	T	A	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474901	NES08995960	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129473938 () rs orientation: forward

Symbol	Name	Function Class
Rr564962	regulatory region 564962	957 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20163	transcription start site region 20163	1995 bp downstream
Tssr20164	transcription start site region 20164	1941 bp downstream
Tssr20165	transcription start site region 20165	1918 bp downstream
Tssr20166	transcription start site region 20166	1884 bp downstream
Tssr20167	transcription start site region 20167	1819 bp downstream
Tssr20168	transcription start site region 20168	1685 bp downstream
Tssr20169	transcription start site region 20169	1591 bp downstream
Tssr20170	transcription start site region 20170	1432 bp downstream
Tssr20171	transcription start site region 20171	1418 bp downstream
Tssr20172	transcription start site region 20172	1350 bp downstream
Tssr20173	transcription start site region 20173	1302 bp downstream
Tssr20174	transcription start site region 20174	1104 bp downstream
Tssr20175	transcription start site region 20175	1089 bp downstream
Tssr20176	transcription start site region 20176	1057 bp downstream
Tssr20177	transcription start site region 20177	739 bp downstream
Tssr20178	transcription start site region 20178	506 bp downstream
Tssr26274	transcription start site region 26274	1944 bp upstream
Tssr26275	transcription start site region 26275	1367 bp upstream