rs27257478 SNP Detail

Summary

• ID
  rs27257478
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129473824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT TCTCCTCTGC CTAAAGACAT
  M
  ACATGTGTAT ACACACACGG GTGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37474902	NES08995959	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C		C	C	A	A		C	A	A	C		C
ss45374852	mCV24478152	ABI	CRAMUS_MOUSE	f	SNP	A	A				C		C
ss147588700	ENSMUSSNP5417475	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
ss320505297	CHEV_2_129457640	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27257478					SNP	A	A	C	A	C	C	C	C	A	A	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474902	NES08995959	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129473824 () rs orientation: forward

Symbol	Name	Function Class
Rr564962	regulatory region 564962	1071 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	1911 bp downstream
Tssr20163	transcription start site region 20163	1881 bp downstream
Tssr20164	transcription start site region 20164	1827 bp downstream
Tssr20165	transcription start site region 20165	1804 bp downstream
Tssr20166	transcription start site region 20166	1770 bp downstream
Tssr20167	transcription start site region 20167	1705 bp downstream
Tssr20168	transcription start site region 20168	1571 bp downstream
Tssr20169	transcription start site region 20169	1477 bp downstream
Tssr20170	transcription start site region 20170	1318 bp downstream
Tssr20171	transcription start site region 20171	1304 bp downstream
Tssr20172	transcription start site region 20172	1236 bp downstream
Tssr20173	transcription start site region 20173	1188 bp downstream
Tssr20174	transcription start site region 20174	990 bp downstream
Tssr20175	transcription start site region 20175	975 bp downstream
Tssr20176	transcription start site region 20176	943 bp downstream
Tssr20177	transcription start site region 20177	625 bp downstream
Tssr20178	transcription start site region 20178	392 bp downstream
Tssr26273	transcription start site region 26273	1902 bp upstream
Tssr26274	transcription start site region 26274	1830 bp upstream
Tssr26275	transcription start site region 26275	1253 bp upstream