rs27257479 SNP Detail

Summary

• ID
  rs27257479
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129473740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CAAACCAGAA CTTGTCTTTG
  K
  CCGGGCCATG TTCTTGGGCT GTCTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37474903	NES08995958	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	G	G	G		G	T	G	G		G	G	G	G		G
ss45269478	mCV24478151	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					T		T
ss320505296	CHEV_2_129457556	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27257479					SNP	G	G	T	G	G	G	G	T	G	T	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474903	NES08995958	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129473740 () rs orientation: forward

Symbol	Name	Function Class
Rr564962	regulatory region 564962	1155 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	1827 bp downstream
Tssr20163	transcription start site region 20163	1797 bp downstream
Tssr20164	transcription start site region 20164	1743 bp downstream
Tssr20165	transcription start site region 20165	1720 bp downstream
Tssr20166	transcription start site region 20166	1686 bp downstream
Tssr20167	transcription start site region 20167	1621 bp downstream
Tssr20168	transcription start site region 20168	1487 bp downstream
Tssr20169	transcription start site region 20169	1393 bp downstream
Tssr20170	transcription start site region 20170	1234 bp downstream
Tssr20171	transcription start site region 20171	1220 bp downstream
Tssr20172	transcription start site region 20172	1152 bp downstream
Tssr20173	transcription start site region 20173	1104 bp downstream
Tssr20174	transcription start site region 20174	906 bp downstream
Tssr20175	transcription start site region 20175	891 bp downstream
Tssr20176	transcription start site region 20176	859 bp downstream
Tssr20177	transcription start site region 20177	541 bp downstream
Tssr20178	transcription start site region 20178	308 bp downstream
Tssr26273	transcription start site region 26273	1818 bp upstream
Tssr26274	transcription start site region 26274	1746 bp upstream
Tssr26275	transcription start site region 26275	1169 bp upstream