rs27257482 SNP Detail

Summary

• ID
  rs27257482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129473315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG TCCGTTTTTT GCCAGCAAAC
  Y
  TCAGCAGGAT CACACTGGAA CAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37474906	NES08995955	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27257482					SNP	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474906	NES08995955	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129473315 () rs orientation: forward

Symbol	Name	Function Class
Rr564962	regulatory region 564962	1580 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	1402 bp downstream
Tssr20163	transcription start site region 20163	1372 bp downstream
Tssr20164	transcription start site region 20164	1318 bp downstream
Tssr20165	transcription start site region 20165	1295 bp downstream
Tssr20166	transcription start site region 20166	1261 bp downstream
Tssr20167	transcription start site region 20167	1196 bp downstream
Tssr20168	transcription start site region 20168	1062 bp downstream
Tssr20169	transcription start site region 20169	968 bp downstream
Tssr20170	transcription start site region 20170	809 bp downstream
Tssr20171	transcription start site region 20171	795 bp downstream
Tssr20172	transcription start site region 20172	727 bp downstream
Tssr20173	transcription start site region 20173	679 bp downstream
Tssr20174	transcription start site region 20174	481 bp downstream
Tssr20175	transcription start site region 20175	466 bp downstream
Tssr20176	transcription start site region 20176	434 bp downstream
Tssr20177	transcription start site region 20177	116 bp downstream
Tssr20178	transcription start site region 20178	103 bp upstream
Tssr26273	transcription start site region 26273	1393 bp upstream
Tssr26274	transcription start site region 26274	1321 bp upstream
Tssr26275	transcription start site region 26275	744 bp upstream