rs27257488 SNP Detail

Summary

• ID
  rs27257488
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129472071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATCACAT ACGCAGACCT
  GAATCTGCCC AAAGAGAAGA AGCCCGCACC CCGGGCCCCT GAGCCTAACA ACCACACAGA
  ATATGCAAGC ATTGAGACAG GCAAAGTGCC TAGGCCAGAG GATACCCTCA CCTATGCTGA
  CCTGGACATG GTCCACCTCA GCCGGGCACA GCCAGCCCCC AAGCCTGAGC CATCTTTCTC
  M
  GAGTATGCTA GTGTCCAGGT CCAGAGGAAG TGAATGGGGC TGTGGTCTGT ACTAGGCCCC
  ATCCCCACAA GTTTTCTTGT CCTACATGGA GTGGCCATGA CGAGGACATC CAGCCAGCCA
  ATCCTGTCCC CAGAAGGCCA GGTGGCACGG GTCCTAGGAC CAGGGGTAAG GGTGGCCTTT
  GTCTTCCCTC CGTGGCTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37474912	NES08995949	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27257488					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474912	NES08995949	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129472071 () rs orientation: forward

Symbol	Name	Function Class
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	158 bp downstream
Tssr20163	transcription start site region 20163	128 bp downstream
Tssr20164	transcription start site region 20164	74 bp downstream
Tssr20165	transcription start site region 20165	51 bp downstream
Tssr20166	transcription start site region 20166	17 bp downstream
Tssr20167	transcription start site region 20167	34 bp upstream
Tssr20168	transcription start site region 20168	160 bp upstream
Tssr20169	transcription start site region 20169	256 bp upstream
Tssr20170	transcription start site region 20170	424 bp upstream
Tssr20171	transcription start site region 20171	436 bp upstream
Tssr20172	transcription start site region 20172	504 bp upstream
Tssr20173	transcription start site region 20173	536 bp upstream
Tssr20174	transcription start site region 20174	581 bp upstream
Tssr20175	transcription start site region 20175	767 bp upstream
Tssr20176	transcription start site region 20176	785 bp upstream
Tssr20177	transcription start site region 20177	1117 bp upstream
Tssr20178	transcription start site region 20178	1347 bp upstream
Tssr26273	transcription start site region 26273	149 bp upstream
Tssr26274	transcription start site region 26274	77 bp upstream
Tssr26275	transcription start site region 26275	471 bp downstream