rs27257489 SNP Detail

Summary

• ID
  rs27257489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129472031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA CCTGGACATG GTCCACCTCA
  R
  CCGGGCACAG CCAGCCCCCA AGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37474913	NES08995948	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27257489					SNP	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474913	NES08995948	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129472031 () rs orientation: forward

Symbol	Name	Function Class
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	118 bp downstream
Tssr20163	transcription start site region 20163	88 bp downstream
Tssr20164	transcription start site region 20164	34 bp downstream
Tssr20165	transcription start site region 20165	11 bp downstream
Tssr20166	transcription start site region 20166	within coordinates
Tssr20167	transcription start site region 20167	74 bp upstream
Tssr20168	transcription start site region 20168	200 bp upstream
Tssr20169	transcription start site region 20169	296 bp upstream
Tssr20170	transcription start site region 20170	464 bp upstream
Tssr20171	transcription start site region 20171	476 bp upstream
Tssr20172	transcription start site region 20172	544 bp upstream
Tssr20173	transcription start site region 20173	576 bp upstream
Tssr20174	transcription start site region 20174	621 bp upstream
Tssr20175	transcription start site region 20175	807 bp upstream
Tssr20176	transcription start site region 20176	825 bp upstream
Tssr20177	transcription start site region 20177	1157 bp upstream
Tssr20178	transcription start site region 20178	1387 bp upstream
Tssr26273	transcription start site region 26273	109 bp upstream
Tssr26274	transcription start site region 26274	37 bp upstream
Tssr26275	transcription start site region 26275	511 bp downstream