rs27257496 SNP Detail

Summary

• ID
  rs27257496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129470624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGTTG TCTCTGTCCA
  ACAGTGTCAC CTCTGGGGAC ACAGGGTTCC TCAGAGCCTT GTAAAACAAG ACAAACCCAG
  TCCTGAACCT GGAACGAAAG CCTCAGCTTT CCTGCTATTT CCAAAGCAGT TGACACCACT
  TTAGACATAA CCTGCTGACG GGGCCAGGCT TGGAGAGGTG TGGGATTTGT AAGCCAGACA
  Y
  CTTGTTGTGC CAGCCCGTAC CAGCCTTAGG CATGAGCTAA GCAGTAATTA GCAAATATGA
  GACCATTTCT AGTCATGGCA ACCAGAGTTC TTGCCCCCTG TTATTTTGTT TCTGTGCTTC
  CTTCTGGAAT CTTCTGGGTA AAAGACTTGG TTAGTGAAGC CTGTAGAAAT TCACATTCCA
  AGACTTACTG AGTGTGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37474921	NES08995999	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27257496					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474921	NES08995999	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129470624 () rs orientation: forward

Symbol	Name	Function Class
Rr564961	regulatory region 564961	1428 bp distal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	1277 bp upstream
Tssr20163	transcription start site region 20163	1297 bp upstream
Tssr20164	transcription start site region 20164	1358 bp upstream
Tssr20165	transcription start site region 20165	1388 bp upstream
Tssr20166	transcription start site region 20166	1407 bp upstream
Tssr20167	transcription start site region 20167	1481 bp upstream
Tssr20168	transcription start site region 20168	1607 bp upstream
Tssr20169	transcription start site region 20169	1703 bp upstream
Tssr20170	transcription start site region 20170	1871 bp upstream
Tssr20171	transcription start site region 20171	1883 bp upstream
Tssr20172	transcription start site region 20172	1951 bp upstream
Tssr20173	transcription start site region 20173	1983 bp upstream
Tssr26273	transcription start site region 26273	1278 bp downstream
Tssr26274	transcription start site region 26274	1338 bp downstream
Tssr26275	transcription start site region 26275	1918 bp downstream