rs27257500 SNP Detail

Summary

• ID
  rs27257500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129470104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG GCTCCTGGGT TCGTTGTGAA
  Y
  CATTGCATAA CATGGGGTAC CAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37474925	NES08995995	PERLEGEN	MM_PANEL2	f	SNP		T		T	T		C	C		T
ss45320394	mCV24478130	ABI	CRAMUS_MOUSE	f	SNP	C	T	T		T
ss147588679	ENSMUSSNP1680092	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			T
ss320505288	CHEV_2_129453920	CHEVERUD	SCREENING_POP	f	SNP						T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27257500					SNP	C	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37474925	NES08995995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129470104 () rs orientation: forward

Symbol	Name	Function Class
Rr564960	regulatory region 564960	1947 bp distal
Rr564961	regulatory region 564961	908 bp distal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	1797 bp upstream
Tssr20163	transcription start site region 20163	1817 bp upstream
Tssr20164	transcription start site region 20164	1878 bp upstream
Tssr20165	transcription start site region 20165	1908 bp upstream
Tssr20166	transcription start site region 20166	1927 bp upstream
Tssr26273	transcription start site region 26273	1798 bp downstream
Tssr26274	transcription start site region 26274	1858 bp downstream