rs27257729 SNP Detail

Summary

• ID
  rs27257729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145814593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCTTT CAGAGGTCCT
  GAGTTTAATT ACCAGCAACC ACATGGTGGC TCCCATCTAT AATGGGATCT GATGCCCTCT
  TCTGGCACAT AGATCATATA TGTATGTATA TATATATATA TATATATATA TATATAATAC
  ACAAAATAAA TAAATCTTTT TTTAAAATGT CAACAATCAT ACAGTAAAAT CGCGGTGAGC
  R
  TTGCATGAAC TTCAGTACCT GGTGCCAATG TCTCAGTGTG CTGAGCATTG TTTTGTTTGT
  AGATCAGGGC AGACTTCATT GAGCTGTTTC CCACCAAACA ACCTTTCTTC ACTTCTCCTC
  TCAGACCAGT CAAGTACTCA GTAAGTGAAC TCAAGAGACA GTGAAGAGTT TCTCTCTGTC
  AAGGAGCCCT GAATTTGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37475855	NES08987449	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27257729					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37475855	NES08987449	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145814593 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr374013	regulatory region 374013	301 bp downstream
Rr566617	regulatory region 566617	1552 bp distal
Rr566618	regulatory region 566618	641 bp distal