rs27259557 SNP Detail

Summary

• ID
  rs27259557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132659149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTACAT TAATCCCCCC
  CTTACTATGT TAATACATTT TTTAGGAGTG CTCTTGACTT GTGGAAGACA TGAGTGGTGC
  TTATAGAGGC AGAGGTTTTG GACGAGGAAG ATTCCAAAGC TGGAAAAGAG GAAGAGGTGG
  TGGGAACTTC TCAGGAAGGT GGAGAGAAAG AGAAAACAGA GTTGACCTGA ATGAAGCTTC
  R
  GGAAAGCACG CTTCTGGTAC GTGCACGCAG GGATCGATAT GTTTTCTCTC GGGAAAGAGA
  CAATTCAAGG GCCGGTAGAT GCCAGAGTAG GTAAGGGGGA CTGCTGCCAA GTGAGGACCC
  TCAGGTCCCT GGAACCTACA TGGTGGAAGG AGAAAACTGA CTCCATAAGC TGCCCTCTGA
  CCTCCACATA TGCACTATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463880	NES08986755	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259557					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463880	NES08986755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132659149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	668 bp distal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	within coordinates
Rr397334	regulatory region 397334	990 bp downstream
Rr565537	regulatory region 565537	1078 bp distal
Rr565538	regulatory region 565538	420 bp distal
Trmt6	tRNA methyltransferase 6	1174 bp upstream
Tssr20335	transcription start site region 20335	1084 bp downstream
Tssr20336	transcription start site region 20336	1061 bp downstream
Tssr20337	transcription start site region 20337	1022 bp downstream
Tssr26490	transcription start site region 26490	1177 bp upstream