rs27259559 SNP Detail

Summary

• ID
  rs27259559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132658832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTTACT TTCTTTTGGA
  ACAGTTTTAG GACAGCCTGC CACAGAAAGT AATACAGCGA AGATTGGGCT ATGTTATTTC
  CCTAGTATCG TACTGGTGAG GATTATTTTC AGCCAATACT GCCCAATATT AGTTCCACAC
  AGAAAACCGG TTCAAGTTAA CTCCTTGATT TCTCTCTTGG TGGTTTGTTG AAAACTGGTA
  Y
  TGAATAAATG TCTATGGTGT ACCTTAATCA TGATGGAGAT TAAAAGAATT AACTATACAA
  CACATAAGGT TTATACTGCA GCATGGAACT TTGCAAGCCT AAGTGCTGGT CTTAAACACA
  GTACATTAAT CCCCCCCTTA CTATGTTAAT ACATTTTTTA GGAGTGCTCT TGACTTGTGG
  AAGACATGAG TGGTGCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463882	NES08986753	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259559					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463882	NES08986753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132658832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	351 bp distal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	within coordinates
Rr397334	regulatory region 397334	673 bp downstream
Rr565537	regulatory region 565537	761 bp distal
Rr565538	regulatory region 565538	103 bp distal
Trmt6	tRNA methyltransferase 6	857 bp upstream
Tssr20335	transcription start site region 20335	767 bp downstream
Tssr20336	transcription start site region 20336	744 bp downstream
Tssr20337	transcription start site region 20337	705 bp downstream
Tssr26490	transcription start site region 26490	860 bp upstream