rs27259560 SNP Detail

Summary

• ID
  rs27259560
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:132658779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCGTAT GAATCTATCA
  ATAGTTTGTA TCTGTGGGAT AGGAATTTTT AAGTGGAGTT ACTTTCTTTT GGAACAGTTT
  TAGGACAGCC TGCCACAGAA AGTAATACAG CGAAGATTGG GCTATGTTAT TTCCCTAGTA
  TCGTACTGGT GAGGATTATT TTCAGCCAAT ACTGCCCAAT ATTAGTTCCA CACAGAAAAC
  M
  GGTTCAAGTT AACTCCTTGA TTTCTCTCTT GGTGGTTTGT TGAAAACTGG TATTGAATAA
  ATGTCTATGG TGTACCTTAA TCATGATGGA GATTAAAAGA ATTAACTATA CAACACATAA
  GGTTTATACT GCAGCATGGA ACTTTGCAAG CCTAAGTGCT GGTCTTAAAC ACAGTACATT
  AATCCCCCCC TTACTATGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463883	NES08986752	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259560					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463883	NES08986752	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132658779 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12310	CpG island 12310			298 bp distal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor			Intron
				Noncoding-Transcript-Variant
Rr397334	regulatory region 397334			620 bp downstream
Rr565537	regulatory region 565537			708 bp distal
Rr565538	regulatory region 565538			50 bp distal
Trmt6	tRNA methyltransferase 6			804 bp upstream
Tssr20335	transcription start site region 20335			714 bp downstream
Tssr20336	transcription start site region 20336			691 bp downstream
Tssr20337	transcription start site region 20337			652 bp downstream
Tssr26490	transcription start site region 26490			807 bp upstream