rs27259562 SNP Detail

Summary

• ID
  rs27259562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132658701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTAGTTTG CATACTTGCG
  AATCTTTTAT TTATTAAAAC CTCTTAGGGT TAGAACAGGT TCTCCTAATG AATTACAGCA
  CAGCGTATGA ATCTATCAAT AGTTTGTATC TGTGGGATAG GAATTTTTAA GTGGAGTTAC
  TTTCTTTTGG AACAGTTTTA GGACAGCCTG CCACAGAAAG TAATACAGCG AAGATTGGGC
  K
  ATGTTATTTC CCTAGTATCG TACTGGTGAG GATTATTTTC AGCCAATACT GCCCAATATT
  AGTTCCACAC AGAAAACCGG TTCAAGTTAA CTCCTTGATT TCTCTCTTGG TGGTTTGTTG
  AAAACTGGTA TTGAATAAAT GTCTATGGTG TACCTTAATC ATGATGGAGA TTAAAAGAAT
  TAACTATACA ACACATAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463885	NES08986750	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259562					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463885	NES08986750	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132658701 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	220 bp distal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	within coordinates
Rr397334	regulatory region 397334	542 bp downstream
Rr565537	regulatory region 565537	630 bp distal
Rr565538	regulatory region 565538	within coordinates
Trmt6	tRNA methyltransferase 6	726 bp upstream
Tssr20335	transcription start site region 20335	636 bp downstream
Tssr20336	transcription start site region 20336	613 bp downstream
Tssr20337	transcription start site region 20337	574 bp downstream
Tssr26490	transcription start site region 26490	729 bp upstream