rs27259564 SNP Detail

Summary

• ID
  rs27259564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132658648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTGAAGA CTTGAGCTTT
  TATCACAGGG CTATCACAAG CAACCTTGAT TATTATTAGT TTGCATACTT GCGAATCTTT
  TATTTATTAA AACCTCTTAG GGTTAGAACA GGTTCTCCTA ATGAATTACA GCACAGCGTA
  TGAATCTATC AATAGTTTGT ATCTGTGGGA TAGGAATTTT TAAGTGGAGT TACTTTCTTT
  Y
  GGAACAGTTT TAGGACAGCC TGCCACAGAA AGTAATACAG CGAAGATTGG GCTATGTTAT
  TTCCCTAGTA TCGTACTGGT GAGGATTATT TTCAGCCAAT ACTGCCCAAT ATTAGTTCCA
  CACAGAAAAC CGGTTCAAGT TAACTCCTTG ATTTCTCTCT TGGTGGTTTG TTGAAAACTG
  GTATTGAATA AATGTCTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37463887	NES08986748	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C		C	T	T	C		C	T	T	C		T
ss45273401	mCV23920754	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss147623040	ENSMUSSNP2050493	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss320509823	CHEV_2_132642464	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27259564					SNP	C	C	T	C	T	C	C	T	C	T	T	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463887	NES08986748	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132658648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	167 bp distal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	within coordinates
Rr397334	regulatory region 397334	489 bp downstream
Rr565537	regulatory region 565537	577 bp distal
Rr565538	regulatory region 565538	within coordinates
Trmt6	tRNA methyltransferase 6	673 bp upstream
Tssr20335	transcription start site region 20335	583 bp downstream
Tssr20336	transcription start site region 20336	560 bp downstream
Tssr20337	transcription start site region 20337	521 bp downstream
Tssr26490	transcription start site region 26490	676 bp upstream