rs27259566 SNP Detail

Summary

• ID
  rs27259566
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132658488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAGCAG GACGCGAGGA
  AGACGGGGAG TCAGGGATTG CGTACGACTT TTCTCAGGCT GCTTCCCTAT GTAGATGTTG
  GAATCGCCAC CGTTCTCAGT ATGTTATCCT GTTGGATCGA TGTGGAACGT AGTGTTGCGA
  TGGAATGTCT CATCCTGAGG ATCCTGAAGA CTTGAGCTTT TATCACAGGG CTATCACAAG
  M
  AACCTTGATT ATTATTAGTT TGCATACTTG CGAATCTTTT ATTTATTAAA ACCTCTTAGG
  GTTAGAACAG GTTCTCCTAA TGAATTACAG CACAGCGTAT GAATCTATCA ATAGTTTGTA
  TCTGTGGGAT AGGAATTTTT AAGTGGAGTT ACTTTCTTTT GGAACAGTTT TAGGACAGCC
  TGCCACAGAA AGTAATACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463889	NES08986745	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259566					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463889	NES08986745	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132658488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	7 bp distal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	within coordinates
Rr397334	regulatory region 397334	329 bp downstream
Rr565537	regulatory region 565537	417 bp distal
Rr565538	regulatory region 565538	within coordinates
Trmt6	tRNA methyltransferase 6	513 bp upstream
Tssr20335	transcription start site region 20335	423 bp downstream
Tssr20336	transcription start site region 20336	400 bp downstream
Tssr20337	transcription start site region 20337	361 bp downstream
Tssr26490	transcription start site region 26490	516 bp upstream