rs27259568 SNP Detail

Summary

• ID
  rs27259568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132657929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTGGACT TGCACTGCTT
  TGAACACATC TTCTCGCTTC AGCACCACGA AGTCACCGTC ATGGATGCAG TGGTCCCCGA
  GAGGCGGGGG CGGTGAGCTC GGCTGCTCCG CAGCTGATGC CTCCATGGAA GCCAGGTAAA
  TTTCAACCTC CGTTTTTGCT CCAGCCGCTA GGAGCCCGGC ACGACCAGGA GGGACCTGCG
  Y
  CTCCGCCGGC ACCGCCCCCA CGTGCTGCAC GCCGCTTCCG CTTTCCGGTC CGGACCTCGG
  GACGGCTTCC GGAAGCCTGG CGACTTCCGT CTCTCTGAAC TCTTTGATTG GCTACACTTC
  ATCCCGCCCC CTAGTCGCGT GGCTTCCTTA AGCAGAAGCG CGTCATAGAC GCGCCAAAAA
  AGAACTTCAA GCGAGGTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463891	NES08986743	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259568					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463891	NES08986743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132657929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	within coordinates
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	132 bp upstream
Rr397334	regulatory region 397334	within coordinates
Rr565537	regulatory region 565537	35 bp proximal
Rr565538	regulatory region 565538	143 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	128 bp upstream
Tssr20336	transcription start site region 20336	139 bp upstream
Tssr20337	transcription start site region 20337	160 bp upstream
Tssr26490	transcription start site region 26490	within coordinates