rs27259571 SNP Detail

Summary

• ID
  rs27259571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132657050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACCT TAAAACAATA
  CTAGGTCGTT TTTTTGTTGG TTTTTTTTTT TTTTTTTGAG ACTGGATTTC TCTGTGTAGC
  CCATCAAACA AACTAATTAA CAAAAAGAGT ACCTTTTAGA ACTAAAGATA CAGTATGTCT
  CCTTGGTAAC AAAAAGGATC ATCTAACAAA ACACATTATA AAAAGGACAT TCAAATGGTT
  R
  TATCAGAACA TGAAGCAAGC TGAGTGTGGT GAAGCAAACC TGTAATCCCA CCACTTGGGA
  GGCAGGAAAG TGTTTGCTTC AGCGGGCCAT CAGCAAGCAC CAGTATGTAT ACTGGGCTTA
  AGCTGGCCAT GTACCTTGTA GTAAGTTCTC TTTTCTTACA GTAGACAGAT TTTTCCCACT
  GGGATCCAGA GAATAAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463894	NES08986777	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259571					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463894	NES08986777	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132657050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	496 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1011 bp upstream
Rr397334	regulatory region 397334	808 bp upstream
Rr565537	regulatory region 565537	914 bp proximal
Rr565538	regulatory region 565538	1022 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1007 bp upstream
Tssr20336	transcription start site region 20336	1018 bp upstream
Tssr20337	transcription start site region 20337	1039 bp upstream
Tssr26490	transcription start site region 26490	848 bp downstream