rs27259572 SNP Detail

Summary

• ID
  rs27259572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGTGTTA ATGAAACACT
  TTACGCCTCT GCCAGCCTAT CTTATGTGCA AAGGTGTGTG TGGTGGGGGC CTGGGGGGCA
  AGCATCCAAA CTGACAGGCC GGAAAGTGTG GGAGGCGATC TGATAAATAA TGAAGCTGCC
  TGTTTCCTGG GAACGATTAA GAGTGGCAGA GAGCCATGAT CTCTTTGGTG ATAGGGAGTC
  Y
  GGCTTGGGAT GCAGCTGGGT TCAGTGGGTC ATTTTCTAAA TAAAACAAAA AATTAGGATC
  GTGGCTTCCT AAGAACAGGG ATAGTAAAAA GAGCTTACAG CTGACTCTTT AGGGAGCTGG
  AGAAATGACC CAGCACTCGA GAGCACTTAC TGCTCTTCCA CAGGATCTGA CTTTGGTTCC
  CAGCACCCAA GTTGTGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37463895	NES08986808	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	C	C	C	T		T	C	C	T		C
ss147623014	ENSMUSSNP3551474	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss320509815	CHEV_2_132640352	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27259572					SNP	T	T	T	C	T	T	C	C	C	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463895	NES08986808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	1010 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1525 bp upstream
Rr397334	regulatory region 397334	1322 bp upstream
Rr565537	regulatory region 565537	1428 bp proximal
Rr565538	regulatory region 565538	1536 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1521 bp upstream
Tssr20336	transcription start site region 20336	1532 bp upstream
Tssr20337	transcription start site region 20337	1553 bp upstream
Tssr26490	transcription start site region 26490	1362 bp downstream