rs27259573 SNP Detail

Summary

• ID
  rs27259573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTAACA TCTATTTTGT
  ACCTCTTATC CTCATCCTTG AATCATGTTG GTGTTAATGA AACACTTTAC GCCTCTGCCA
  GCCTATCTTA TGTGCAAAGG TGTGTGTGGT GGGGGCCTGG GGGGCAAGCA TCCAAACTGA
  CAGGCCGGAA AGTGTGGGAG GCGATCTGAT AAATAATGAA GCTGCCTGTT TCCTGGGAAC
  R
  ATTAAGAGTG GCAGAGAGCC ATGATCTCTT TGGTGATAGG GAGTCCGGCT TGGGATGCAG
  CTGGGTTCAG TGGGTCATTT TCTAAATAAA ACAAAAAATT AGGATCGTGG CTTCCTAAGA
  ACAGGGATAG TAAAAAGAGC TTACAGCTGA CTCTTTAGGG AGCTGGAGAA ATGACCCAGC
  ACTCGAGAGC ACTTACTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37463896	NES08986806	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27259573					SNP	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463896	NES08986806	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656490 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12310	CpG island 12310			1056 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor			1571 bp upstream
Rr397334	regulatory region 397334			1368 bp upstream
Rr565537	regulatory region 565537			1474 bp proximal
Rr565538	regulatory region 565538			1582 bp proximal
Trmt6	tRNA methyltransferase 6			Intron
				Noncoding-Transcript-Variant
Tssr20335	transcription start site region 20335			1567 bp upstream
Tssr20336	transcription start site region 20336			1578 bp upstream
Tssr20337	transcription start site region 20337			1599 bp upstream
Tssr26490	transcription start site region 26490			1408 bp downstream