rs27259574 SNP Detail

Summary

• ID
  rs27259574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAATTCT TACTCTTTGC
  TGGATTTCCA GTAACTAACA TCTATTTTGT ACCTCTTATC CTCATCCTTG AATCATGTTG
  GTGTTAATGA AACACTTTAC GCCTCTGCCA GCCTATCTTA TGTGCAAAGG TGTGTGTGGT
  GGGGGCCTGG GGGGCAAGCA TCCAAACTGA CAGGCCGGAA AGTGTGGGAG GCGATCTGAT
  R
  AATAATGAAG CTGCCTGTTT CCTGGGAACG ATTAAGAGTG GCAGAGAGCC ATGATCTCTT
  TGGTGATAGG GAGTCCGGCT TGGGATGCAG CTGGGTTCAG TGGGTCATTT TCTAAATAAA
  ACAAAAAATT AGGATCGTGG CTTCCTAAGA ACAGGGATAG TAAAAAGAGC TTACAGCTGA
  CTCTTTAGGG AGCTGGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37463897	NES08986804	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A	A	A		G	A	A	G		A
ss320509811	CHEV_2_132640276	CHEVERUD	SCREENING_POP	f	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27259574					SNP	G	A	G	A	A	A	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463897	NES08986804	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656460 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12310	CpG island 12310			1086 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor			1601 bp upstream
Rr397334	regulatory region 397334			1398 bp upstream
Rr565537	regulatory region 565537			1504 bp proximal
Rr565538	regulatory region 565538			1612 bp proximal
Trmt6	tRNA methyltransferase 6			Intron
				Noncoding-Transcript-Variant
Tssr20335	transcription start site region 20335			1597 bp upstream
Tssr20336	transcription start site region 20336			1608 bp upstream
Tssr20337	transcription start site region 20337			1629 bp upstream
Tssr26490	transcription start site region 26490			1438 bp downstream