rs27259578 SNP Detail

Summary

• ID
  rs27259578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATCTCT CCAGCCCGGC
  AAGATCTCTC TTGTTCACTG TTATATATGT CAGGCAAGCA GTCTCAAACT TCTATAGAGT
  CTCCTGTGTG TGCCTCCATC CTGCTGTAAG AACGCTGGGA TTACAGATAT GTACCATAGC
  ACCTCATGCT TATGTGGTTA AGAGCTCTAC CCTTTGAGTC ATCTCCCCTC ATTCATCAAA
  Y
  GCCACTTGAA CTACATGTCC TCTGGAGGTG CTCCTGACTC CTAATTCTTA CTCTTTGCTG
  GATTTCCAGT AACTAACATC TATTTTGTAC CTCTTATCCT CATCCTTGAA TCATGTTGGT
  GTTAATGAAA CACTTTACGC CTCTGCCAGC CTATCTTATG TGCAAAGGTG TGTGTGGTGG
  GGGCCTGGGG GGCAAGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37463901	NES08986797	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	T	T	C		C	T	T	C		T
ss320509806	CHEV_2_132640037	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27259578					SNP	C	T	C	T	C	T	T	T	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463901	NES08986797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	1325 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1840 bp upstream
Rr397334	regulatory region 397334	1637 bp upstream
Rr565537	regulatory region 565537	1743 bp proximal
Rr565538	regulatory region 565538	1851 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1836 bp upstream
Tssr20336	transcription start site region 20336	1847 bp upstream
Tssr20337	transcription start site region 20337	1868 bp upstream
Tssr26490	transcription start site region 26490	1677 bp downstream