rs27259628 SNP Detail

Summary

• ID
  rs27259628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132646753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTACCACA GTTCAAATAA
  ACGTGTATTC CTTCTCTGTC CCACCACAGG TAGTACATTC TGTCCATGCT GACATATAGA
  TACATCTATG TGTATGCATA TATACCAACA CTGATACAGG TTTCTGTGTG TCTGTGTCTA
  GAGAGAGAAA AACCCAATTG TTTAATAGTA CACAGAAGTT CCAATCACTT CACCCAGAAC
  Y
  GAGGAGACCC TTTCACCGCA AAGGAGCACC CACCACCCTT TCTATGTACC AAAAAAGGAG
  AGGCAGGAAA AGAAATACCT GGATCTTCCT CAGGCCATTG ACTATTAAAA TAACAAAATC
  TAGTATCTAA AAAAAAGCTT CTTTCATTGC AGGGCAAGGG TAGACGTTTT GGTACTGTAA
  ATCTCACAGG CACACACATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37463954	NES08987047	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27259628					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37463954	NES08987047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132646753 () rs orientation: forward

Symbol	Name	Function Class
Trmt6	tRNA methyltransferase 6	within coordinates