rs27259863 SNP Detail

Summary

• ID
  rs27259863
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130533583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGCTCCAG CATCTGTAAA GAGCTTAGCC ATGAGCAGGT
  CCAGGTCACA GTCAGGTTCT GCGTGGTTAG GGTCCAGGGC AAAGCGGTTT AGCATAGTTC
  K
  GAGGACATCA TCCAGTGAGG TAGCTGTCTC ATTCAGGATG ATGCTGGCCT GGGCCAGGAA
  GCCATCCAGG TCCCGGTGTG CACGGACCTC TTCCTCAAAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37470892	NES08993157	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27259863					SNP	T	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37470892	NES08993157	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130533583 () rs orientation: forward

Symbol	Name	Function Class
Rr373865	regulatory region 373865	1806 bp upstream
Rr565121	regulatory region 565121	1245 bp proximal
Slc4a11	solute carrier family 4, sodium bicarbonate transporter-like, member 11	within coordinates