rs27259864 SNP Detail

Summary

• ID
  rs27259864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130533545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAGGCCAG GGAGACAGCC TTACCCTTGC TCTCCATAGG
  GGCTCCAGCA TCTGTAAAGA GCTTAGCCAT GAGCAGGTCC AGGTCACAGT CAGGTTCTGC
  R
  TGGTTAGGGT CCAGGGCAAA GCGGTTTAGC ATAGTTCGGA GGACATCATC CAGTGAGGTA
  GCTGTCTCAT TCAGGATGAT GCTGGCCTGG GCCAGGAAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37470893	NES08993156	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27259864					SNP	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37470893	NES08993156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130533545 () rs orientation: forward

Symbol	Name	Function Class
Rr373865	regulatory region 373865	1844 bp upstream
Rr565121	regulatory region 565121	1283 bp proximal
Slc4a11	solute carrier family 4, sodium bicarbonate transporter-like, member 11	within coordinates