rs27259866 SNP Detail

Summary

• ID
  rs27259866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130533470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGGGACC AGGCATGGTA
  GTTGTAGGAT GGCAACTCAC ATGATGCAGA GCCAAGACTG CTCGTACTGC ACCCCTCGGA
  CAGTGGCAGT GACTCCCTGG ATGGTATCTG ACAGCAGGTG GACTAAGAGG AGAATACGGG
  AGAGAGAGTC AGCTGCTGCA GCCAAGCCAT TCCGTGGCAG GCCAGGGAGA CAGCCTTACC
  Y
  TTGCTCTCCA TAGGGGCTCC AGCATCTGTA AAGAGCTTAG CCATGAGCAG GTCCAGGTCA
  CAGTCAGGTT CTGCGTGGTT AGGGTCCAGG GCAAAGCGGT TTAGCATAGT TCGGAGGACA
  TCATCCAGTG AGGTAGCTGT CTCATTCAGG ATGATGCTGG CCTGGGCCAG GAAGCCATCC
  AGGTCCCGGT GTGCACGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37470895	NES08993154	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27259866					SNP	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37470895	NES08993154	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130533470 () rs orientation: forward

Symbol	Name	Function Class
Rr373865	regulatory region 373865	1919 bp upstream
Rr565121	regulatory region 565121	1358 bp proximal
Slc4a11	solute carrier family 4, sodium bicarbonate transporter-like, member 11	within coordinates