rs27260417 SNP Detail

Summary

• ID
  rs27260417
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167453780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTCCCC GCCTCTGAGA
  GTGCTGCCAC CCATCATCCA TCTAGCACGC ACAGCAGAAC TCGGCTATAG GGTCTGGGTG
  TCTGGGTGGA GGAATGCTGC TCATAGCTTG TGGGTTCACA TCTGCTGAGG TATCCCAAGC
  AGGATTAGCC CCTCAGCCCC CAGCACAGGG TCCATAAAAA CTTACAACCC CCAGGAGCAC
  M
  CAGGAGAAAG AAGCCAAGGC AAGGCTGCCA AAGTTCACTG TTCCAGGTAA GAGCTCTAAA
  GTGAGGCCCT ACAAACAAAC AAACAAACAA ACAAACAAAC AAACAAGGAA GAGCGGGACG
  GAGGAAGGGA GGGAGGGGTC TGGGGAGCAG CTGAGAGCAC TGGCTGTTCT AAGCCATCTA
  TAACCCCAGT TCCAGGCGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507538	NES08845392	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260417					SNP	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507538	NES08845392	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167453780 () rs orientation: forward

Symbol	Name	Function Class
Gm20431	predicted gene 20431	within coordinates
Rr570662	regulatory region 570662	153 bp distal
Rr570663	regulatory region 570663	412 bp distal
Rr570664	regulatory region 570664	349 bp distal
Rr570665	regulatory region 570665	1646 bp proximal
Ube2v1	ubiquitin-conjugating enzyme E2 variant 1	within coordinates