rs27260421 SNP Detail

Summary

• ID
  rs27260421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167453128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAACCATC TCTTCACTGA
  GATACATAAG AAGACGGGCG TGGTGGCTCA CGCCTTTAAT CCCAGCATTT GGGAGGCAGA
  GGAAGATGGA TTTCTGAGTT TGAGGCCAGC CTGGTCTACA GAGTGAGTTC CAGGACAGCC
  AGGGCTACAC AGAGAAACCC TATCTCAAAA AAACCAAACC AAACCAACAA ACAAAAAGAG
  R
  CCCACAGGAA AGTGAGGCCC ACACCAGCAC CTGTAATGTT CAACAGCAAA TTGTGCCTGG
  CCCAGCCCAA TCATGTGTGG AACATCCACC CCGAGTGGAA ACATCACACA GCCCTGAACA
  CCTGGCTGCA AGCACCCTAC TCTGTGACTG TGCCTAAAGA CAACACTGCA GAGACCTTCC
  ACATGGGACC TGTGCCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507542	NES08845388	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260421					SNP	A	A	A	A	A	A	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507542	NES08845388	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167453128 () rs orientation: forward

Symbol	Name	Function Class
Gm20431	predicted gene 20431	within coordinates
Rr570662	regulatory region 570662	208 bp proximal
Rr570663	regulatory region 570663	219 bp proximal
Rr570664	regulatory region 570664	282 bp proximal
Ube2v1	ubiquitin-conjugating enzyme E2 variant 1	within coordinates