rs27260423 SNP Detail

Summary

• ID
  rs27260423
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167452150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGCCAT GGACACTGAA
  CACTCTTTTT TTCTTGGTTT TTCTGTGTAG CCCTGGCTGT CCTGGAACTC ACTCTGTAGA
  CTAGGCTGTC CTTAAACTCA GAAATCCGTC TGCCTCTGCC TCCCAAGTGC TGGGATTAAA
  GGTGTGCGCC ACCACGCCCG GCTGACAGCC AGTGCAGGGC TCCTGCAGTG ACAAGCCACA
  M
  TGGAGCGGCC CTGCCCAACG CTGCAGACAC AAGCGCACCG TGATAACCTA CAGGCAGGCA
  GTGGGGGACT CACCACTCCA TTCGAACTGC TCACGCCGCT CATATTGACT CTTGTTACGA
  ATCTTACAGA CGGGGGTGCC TCTGGGTACT TAGGCCCACA CTCTATCTTA AGGCTGTATA
  TTCGGTTTTC ATAGATTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37507545	NES08845411	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27260423					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507545	NES08845411	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167452150 () rs orientation: forward

Symbol	Name	Function Class
Gm20431	predicted gene 20431	within coordinates
Rr570662	regulatory region 570662	1186 bp proximal
Rr570663	regulatory region 570663	1197 bp proximal
Rr570664	regulatory region 570664	1260 bp proximal
Ube2v1	ubiquitin-conjugating enzyme E2 variant 1	within coordinates