rs27260424 SNP Detail

Summary

• ID
  rs27260424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167452122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCCCCA ACTTCCCAAC
  TCTACCTCAT GGTGCCATGG ACACTGAACA CTCTTTTTTT CTTGGTTTTT CTGTGTAGCC
  CTGGCTGTCC TGGAACTCAC TCTGTAGACT AGGCTGTCCT TAAACTCAGA AATCCGTCTG
  CCTCTGCCTC CCAAGTGCTG GGATTAAAGG TGTGCGCCAC CACGCCCGGC TGACAGCCAG
  Y
  GCAGGGCTCC TGCAGTGACA AGCCACAATG GAGCGGCCCT GCCCAACGCT GCAGACACAA
  GCGCACCGTG ATAACCTACA GGCAGGCAGT GGGGGACTCA CCACTCCATT CGAACTGCTC
  ACGCCGCTCA TATTGACTCT TGTTACGAAT CTTACAGACG GGGGTGCCTC TGGGTACTTA
  GGCCCACACT CTATCTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37507546	NES08845410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27260424					SNP	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37507546	NES08845410	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167452122 () rs orientation: forward

Symbol	Name	Function Class
Gm20431	predicted gene 20431	within coordinates
Rr570662	regulatory region 570662	1214 bp proximal
Rr570663	regulatory region 570663	1225 bp proximal
Rr570664	regulatory region 570664	1288 bp proximal
Ube2v1	ubiquitin-conjugating enzyme E2 variant 1	within coordinates